{rfName}
Co

Indexed in

License and Use

Icono OpenAccess

Citations

3

Altmetrics

Analysis of institutional authors

King E.Author

Share

June 9, 2025
Publications
>
Article
No

Comparative genomics and transcriptomic response to root exudates of six rice root-associated Burkholderia sensu lato species

Publicated to: Peer Community Journal. 3 - 2023-01-01 3(), DOI: 10.24072/pcjournal.252

Authors:

Wallner A; Klonowska A; Guigard L; King E; Rimbault I; Ngonkeu E; Nguyen P; Béna G; Moulin L
[+]

Affiliations

Institute of Agronomic Research for Development (IRAD); PO Box 2123; Yaoundé; Cameroon - Author
PHIM Plant Health Institute; Univ Montpellier; IRD; CIRAD; INRAE; Institut Agro; Montpellier; France - Author
University of Science and Technology of Hanoi (USTH); 18 Hoang Quoc Viet; Cau Giay District; Hanoi; Viet Nam - Author
See more

Abstract

Beyond being a reliable nutrient provider, some bacteria will perceive the plant as a potential host and undertake root colonization leading to mutualistic or parasitic interactions. Bacteria of the Burkholderia and Paraburkholderia genera are frequently found in the rhizosphere of rice. While the latter are often described as plant growth promoting species, Burkholderia are often studied for their human opportunistic traits. Here, we used root exudate stimulation on three Burkholderia and three Paraburkholderia strains isolated from rice roots to characterize their preliminary adaptation to the rice host at the transcriptomic level. Instead of the awaited genus-dependent adaptation, we observed a strongly species-specific response for all tested strains. While all bacteria originate from the rice environment, there are great disparities in their levels of adaptation following the sensing of root exudates. We further report the shared major functions that were differentially regulated in this early step of bacterial adaptation to plant colonization, including amino acids and putrescine metabolism, the Entner-Doudoroff (ED) pathway as well as cyclic diguanylate monophosphate (c-di-GMP) cycling. © 2023, Centre Mersenne. All rights reserved.
[+]

Quality index

Bibliometric impact. Analysis of the contribution and dissemination channel

The work has been published in the journal Peer Community Journal, Q4 Agency Scopus (SJR), its regional focus and specialization in , give it significant recognition in a specific niche of scientific knowledge at an international level.

Independientemente del impacto esperado determinado por el canal de difusión, es importante destacar el impacto real observado de la propia aportación.

Según las diferentes agencias de indexación, el número de citas acumuladas por esta publicación hasta la fecha 2025-12-21:

  • Scopus: 2
[+]

Impact and social visibility

From the perspective of influence or social adoption, and based on metrics associated with mentions and interactions provided by agencies specializing in calculating the so-called "Alternative or Social Metrics," we can highlight as of 2025-12-21:

  • The use of this contribution in bookmarks, code forks, additions to favorite lists for recurrent reading, as well as general views, indicates that someone is using the publication as a basis for their current work. This may be a notable indicator of future more formal and academic citations. This claim is supported by the result of the "Capture" indicator, which yields a total of: 12 (PlumX).

It is essential to present evidence supporting full alignment with institutional principles and guidelines on Open Science and the Conservation and Dissemination of Intellectual Heritage. A clear example of this is:

  • The work has been submitted to a journal whose editorial policy allows open Open Access publication.
  • Additionally, the work has been submitted to a journal classified as Diamond in relation to this type of editorial policy.
[+]

Leadership analysis of institutional authors

This work has been carried out with international collaboration, specifically with researchers from: Cameroon; France.

[+]